Jefferson River

The Jefferson River, along with the Madison and Gallatin, is one of the three tributaries that form the Missouri River near Three Forks, MT. The Beaverhead, Big Hole, and Ruby form the Jefferson River near Twin Bridges, MT. One of the larger rivers in the region, Jefferson has over 50 miles of quality trout water which flows through a diverse landscape including canyons and wide-open valleys.

The Jefferson River is one of the least heralded fisheries in Montana as the drought years of the last decade, along with heavy irrigation demands, severely hurt both the trout habitat and populations. Conservation efforts and a reprieve from the drought in recent years has brought the river back to the minds of many anglers. Typically not the river of choice when it comes to finding big numbers of trout, fly fishing the Jefferson is a great option for anglers looking to get away from crowds, enjoy the beautiful scenery, and target larger fish on a guided float trip.

Where We Guide on the Jefferson

The headwaters of the Jefferson River are a little over an hour’s drive from Bozeman, near Twin Bridges, MT. The upper stretches of the river are considered to have the best trout populations and receive more attention from guides than the rest of the river. There are several outfitters and guide services in Twin Bridges and Dillon that fish the upper river nearly every day, so our guides focus their attention on the middle and lower stretches between Whitehall and Three Forks, Montana The biggest key to success on the Jefferson River is being the first or second boat on the water, so our Bozeman fly fishing guides always head out early when going that way.

When to Fly Fish the Jefferson River

The Jefferson River is open year-round but flies fishing is best from April to October. Our guides' favorite times of the year for Jefferson River fly fishing are late spring, just before the runoff and just after the runoff in early summer. There is reliable fishing throughout the summer months as well, but conditions vary from year to year depending on weather patterns and winter snowpack. The river typically fills with aquatic vegetation in low summer flows, so it can be difficult to fish with anything other than a big dry fly by early August. If you are looking for a big Brown Trout and like to fish big streamers, Jefferson can be tough to beat in October and early November.

Highlights of Jefferson River Fly Fishing

Early season, as the waters flows are dropping and clearing following the runoff, is our favorite time of year to fly fish the Jefferson River. Oftentimes, when there is only a foot or two of visibility and the waters are still above the “summer” bank, Jefferson can fish as well as any river in the west. Big streamers and nymphs fished on heavy tippet right against the bank from a drift boat can be deadly on the big browns that are normally very wary the rest of the year. Good flows this time of year give the normally placid river a lot of character in higher flows and always makes for a great time on the water.

Hopper fishing on Jefferson can be “hit or miss” during July and August but is something we like to try every few days with experienced anglers. It’s pretty typical to go aways between fish this time of year as lower summer flows tend to concentrate the trout into smaller areas of good holding water. However, the trout that do come up to eat a hopper often do so with authority, run hard, and average in size around 16+”.

Tricos are a small, black Mayfly that hatch in the pre-dawn hours and then come to the water surface late morning in what is described as a “spinner fall.” These hatches are very dense with the spinner fall being the kind of experience you simply have to see to believe. The vast numbers of bugs that end up on the water bring trout to the surface in the late morning and can provide some great “match the hatch” dry fly fishing where we target specific trout as they slowly sip down the spinners.

The Fish We Catch

The Jefferson River is a wild trout fishery so one can expect to catch a wide range of trout sizes throughout the year. There are less fish per mile in the Jefferson than the other blue-ribbon streams in southwest Montana, so the average size of fish tends to be slightly larger. We expect to catch Rainbows that will primarily be in the 16-17” range and fight exceptionally well. Brown Trout are also common throughout the river with the average size being slightly larger than the Rainbows, with some reaching the 25” mark. On a good day, we’ll end with 15 trout in the boat with a dozen or so in the 14-17” range and a few larger ones too. A tough day usually looks more like 3 fish that are each about 16”.

Jefferson River Guided Fly Fishing Trips

Our Montana fly fishing guides are always up for a float trip on the Jefferson River as it offers a chance to catch a large fish or two away from the crowds in some stunning country. We only offer full-day float trips on the Jefferson River as a low density of trout numbers makes for long walks between holding water. Typical drive time to the Jefferson is anywhere from 30-60 minutes each way. The guides provide everything you need for a day on the river with the exception of a Montana fishing license.

Be sure to discuss a Jefferson River fly fishing trip with your guide if you are planning on booking a few days of guided fly fishing in Bozeman as it offers s change of pace from the Madison or Yellowstone. Call us at 214-809-9197 or send us an e-mail if you have questions about fly fishing the Jefferson River or would like help with planning your Montana fly fishing vacation.

View this profile on Instagram

Fins & Feathers Guide Service (@flyfishingbozeman) • Instagram photos and videos